Electron Microscopy Data Bank

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Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (intermediate state)

Release date: May 1, 2024
Resolution: 4.26 Å
EM Method: Single-particle
Fitted PDBs: 8h8d
Q-score: 0.332

Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

To Be Published

Sample:

Complex of xenopus tropical acid-sensitive outwardly rectifying channel asor trimer and trna in gdn (Complex from Xenopus tropicalis)
Proton-activated chloride channel (41 kDa, Protein from Xenopus tropicalis)

EMD-34544

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Structure of the dimeric Xenopus tropical acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (closed state)

Release date: May 1, 2024
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 8h8e
Q-score: 0.368

Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

To Be Published

Sample:

Trna (75-mer)of spodoptera frugiperda (24 kDa, RNA from Spodoptera frugiperda)
Proton-activated chloride channel (41 kDa, Protein from Xenopus tropicalis)
Complex of xenopus tropical acid-sensitive outwardly rectifying channel asor trimer and trna in digitonin (Complex from Xenopus tropicalis)

EMD-34545

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Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR (resting state)

Release date: May 1, 2024
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8h8f
Q-score: 0.391

Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

To Be Published

Sample:

EMD-34992

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Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens (UltrAuFoil)

Release date: May 1, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8hsb
Q-score: 0.38

Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B

Nat Microbiol (2024) [ DOI: doi:10.1038/s41564-024-01684-z Pubmed: 38649411 ]

Sample:

Cdng (45 kDa, Protein from Serratia marcescens)
Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
Cdng-e2 binary complex (Complex from Serratia marcescens)

EMD-36980

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Cryo-EM structure of DSR2-TTP

Release date: May 1, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8k98
Q-score: 0.486

Yin H, Li X, Wang X, Zhang C, Gao J, Yu G, He Q, Yang J, Liu X, Wei Y, Li Z, Zhang H

Nat Commun (2024) 15 pp. 2692-2692 [ DOI: doi:10.1038/s41467-024-47030-z Pubmed: 38538592 ]

Sample:

Cryo-em structure of a protein (Complex from Bacillus halotolerans)
A protein (29 kDa, Protein from Bacillus halotolerans)
A protein (118 kDa, Protein from Bacillus halotolerans)

EMD-36982

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Cryo-EM structure of DSR2-DSAD1 state 2

Release date: May 1, 2024
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8k9a
Q-score: 0.39

Yin H, Li X, Wang X, Zhang C, Gao J, Yu G, He Q, Yang J, Liu X, Wei Y, Li Z, Zhang H

Nat Commun (2024) 15 pp. 2692-2692 [ DOI: doi:10.1038/s41467-024-47030-z Pubmed: 38538592 ]

Sample:

Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
Spbeta prophage-derived uncharacterized protein yoti (13 kDa, Protein from Bacillus subtilis)
Cryo-em structure of a protein (Complex from Bacillus subtilis)

EMD-37272

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Cryo-EM structure of DSR2-DSAD1 state 1

Release date: May 1, 2024
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 8w56
Q-score: 0.388

Yin H, Li X, Wang X, Zhang C, Gao J, Yu G, He Q, Yang J, Liu X, Wei Y, Li Z, Zhang H

Nat Commun (2024) 15 pp. 2692-2692 [ DOI: doi:10.1038/s41467-024-47030-z Pubmed: 38538592 ]

Sample:

Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
Spbeta prophage-derived uncharacterized protein yoti (13 kDa, Protein from Bacillus subtilis)
Cryo-em structure of a protein (Complex from Bacillus subtilis)

EMD-37603

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Cryo-EM structure of DSR2-DSAD1

Release date: May 1, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8wkn
Q-score: 0.484

Yin H, Li X, Wang X, Zhang C, Gao J, Yu G, He Q, Yang J, Liu X, Wei Y, Li Z, Zhang H

Nat Commun (2024) 15 pp. 2692-2692 [ DOI: doi:10.1038/s41467-024-47030-z Pubmed: 38538592 ]

Sample:

Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
Spbeta prophage-derived uncharacterized protein yoti (13 kDa, Protein from Bacillus subtilis)
Cryo-em structure of a protein (Complex from Bacillus subtilis)

EMD-38421

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Cryo-EM structure of tail tube protein

Release date: May 1, 2024
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8xkn
Q-score: 0.542

Yin H, Li X, Wang X, Zhang C, Gao J, Yu G, He Q, Yang J, Liu X, Wei Y, Li Z, Zhang H

Nat Commun (2024) 15 pp. 2692-2692 [ DOI: doi:10.1038/s41467-024-47030-z Pubmed: 38538592 ]

Sample:

Cryo-em structure of tail tube protein (Complex from Bacillus halotolerans)
A protein (29 kDa, Protein from Bacillus halotolerans)

EMD-39353

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Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens

Release date: May 1, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8yjy
Q-score: 0.426

Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B

Nat Microbiol (2024) [ DOI: doi:10.1038/s41564-024-01684-z Pubmed: 38649411 ]

Sample:

Cdng-e2 binary complex (Complex from Serratia marcescens)
Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
Smcdng (45 kDa, Protein from Serratia marcescens)

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